dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00552
Location and strand information: 29889 - 31994 (+)
Family: 3.A.9.1.2
Protein type: TC
Protein description: putative ATP-dependent Clp protease ATP-binding subunit

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00553
Location and strand information: 32054 - 32536 (-)
Family: null
Protein type: null
Protein description: S-ribosylhomocysteine lyase

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00554
Location and strand information: 32631 - 34115 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00555
Location and strand information: 34268 - 35878 (+)
Family: GH13_31|GH13
Protein type: CAZyme
Protein description: Glucan 1,6-alpha-glucosidase
Protein isoelectric point: 4.3116
Protein molecular weight: 62155.96
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00556
Location and strand information: 36047 - 38014 (+)
Family: 3.A.1.5.25
Protein type: TC
Protein description: Oligopeptide-binding protein AmiA

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00557
Location and strand information: 38164 - 40122 (+)
Family: 3.A.1.5.19
Protein type: TC
Protein description: Oligopeptide-binding protein SarA

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00558
Location and strand information: 40318 - 41763 (+)
Family: null
Protein type: null
Protein description: Transcriptional regulator LytR

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00559
Location and strand information: 41765 - 42496 (+)
Family: null
Protein type: null
Protein description: Tyrosine-protein phosphatase CpsB

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00560
Location and strand information: 42505 - 43197 (+)
Family: 8.A.3.2.3
Protein type: TC
Protein description: Capsular polysaccharide type 8 biosynthesis protein cap8A

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00561
Location and strand information: 43207 - 43890 (+)
Family: 8.A.3.2.2
Protein type: TC
Protein description: Tyrosine-protein kinase CpsD

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00562
Location and strand information: 43913 - 45280 (+)
Family: 9.B.18.1.2
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00563
Location and strand information: 45285 - 46070 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00564
Location and strand information: 46117 - 46812 (+)
Family: GT26
Protein type: CAZyme
Protein description: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase
Protein isoelectric point: 6.2824
Protein molecular weight: 26750.65
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00565
Location and strand information: 46787 - 47872 (+)
Family: GT4
Protein type: CAZyme
Protein description: Glycosyltransferase Gtf1
Protein isoelectric point: 6.8357
Protein molecular weight: 40853.02
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00566
Location and strand information: 47869 - 48963 (+)
Family: GT0
Protein type: CAZyme
Protein description: UDP-N-acetylglucosamine 2-epimerase
Protein isoelectric point: 4.9171
Protein molecular weight: 41047.19
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00567
Location and strand information: 48963 - 49928 (+)
Family: GT2
Protein type: CAZyme
Protein description: Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
Protein isoelectric point: 7.4555
Protein molecular weight: 37051.28
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00568
Location and strand information: 49952 - 51097 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00569
Location and strand information: 51239 - 52663 (+)
Family: 2.A.66.2.16
Protein type: TC
Protein description: Putative O-antigen transporter

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00570
Location and strand information: 52665 - 53762 (+)
Family: Pyr_redox
Protein type: STP
Protein description: UDP-galactopyranose mutase

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00571
Location and strand information: 53787 - 54842 (+)
Family: GT113
Protein type: CAZyme
Protein description: Beta-1,6-galactofuranosyltransferase WbbI
Protein isoelectric point: 7.0717
Protein molecular weight: 39546.36
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00572
Location and strand information: 55080 - 57062 (+)
Family: 3.A.1.5.19
Protein type: TC
Protein description: Oligopeptide-binding protein SarA

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00573
Location and strand information: 57360 - 63914 (+)
Family: GH20|GH101|CBM32
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.2163
Protein molecular weight: 239917.64
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00574
Location and strand information: 64057 - 72498 (+)
Family: GH20|GH84|CBM32
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.4381
Protein molecular weight: 311602.35
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003134_4|CGC1
Gene ID: MGYG000003134_00575
Location and strand information: 72727 - 74940 (-)
Family: GT51
Protein type: CAZyme
Protein description: Penicillin-binding protein 1A
Protein isoelectric point: 5.2911
Protein molecular weight: 81134.28
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000003134_00555	GH13_e0\|5.4.99.11\|3.2.1.70\|3.2.1.20\|3.2.1.10\|3.2.1.-\|2.4.1.-	sucrose\|starch
MGYG000003134_00564	GT26_e103
MGYG000003134_00565	GT4_e1399
MGYG000003134_00566	GT0_e83
MGYG000003134_00567	GT2_e863
MGYG000003134_00571
MGYG000003134_00573	GH20_e23\|GH101_e0\|CBM32_e0\|3.2.1.97	hostglycan
MGYG000003134_00574	GH84_e8\|GH20_e23\|CBM32_e140\|3.2.1.52\|3.2.1.35	hostglycan
MGYG000003134_00575	GT51_e79\|2.4.1.129

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is host glycan

Substrate predicted by dbCAN-PUL is capsule polysaccharide synthesis download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000003134_00552	putative ATP-dependent Clp protease ATP-binding subunit	TC	29889	31994	+	3.A.9.1.2
MGYG000003134_00553	S-ribosylhomocysteine lyase	null	32054	32536	-	LuxS
MGYG000003134_00554	hypothetical protein	null	32631	34115	-	DUF1846
MGYG000003134_00555	Glucan 1,6-alpha-glucosidase	CAZyme	34268	35878	+	GH13_31\| GH13
MGYG000003134_00556	Oligopeptide-binding protein AmiA	TC	36047	38014	+	3.A.1.5.25
MGYG000003134_00557	Oligopeptide-binding protein SarA	TC	38164	40122	+	3.A.1.5.19
MGYG000003134_00558	Transcriptional regulator LytR	null	40318	41763	+	DNA_PPF\| LytR_cpsA_psr
MGYG000003134_00559	Tyrosine-protein phosphatase CpsB	null	41765	42496	+	CpsB_CapC
MGYG000003134_00560	Capsular polysaccharide type 8 biosynthesis protein cap8A	TC	42505	43197	+	8.A.3.2.3
MGYG000003134_00561	Tyrosine-protein kinase CpsD	TC	43207	43890	+	8.A.3.2.2
MGYG000003134_00562	hypothetical protein	TC	43913	45280	+	9.B.18.1.2
MGYG000003134_00563	hypothetical protein	null	45285	46070	+	LicD
MGYG000003134_00564	N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase	CAZyme	46117	46812	+	GT26
MGYG000003134_00565	Glycosyltransferase Gtf1	CAZyme	46787	47872	+	GT4
MGYG000003134_00566	UDP-N-acetylglucosamine 2-epimerase	CAZyme	47869	48963	+	GT0
MGYG000003134_00567	Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	CAZyme	48963	49928	+	GT2
MGYG000003134_00568	hypothetical protein	null	49952	51097	+	No domain
MGYG000003134_00569	Putative O-antigen transporter	TC	51239	52663	+	2.A.66.2.16
MGYG000003134_00570	UDP-galactopyranose mutase	STP	52665	53762	+	Pyr_redox
MGYG000003134_00571	Beta-1,6-galactofuranosyltransferase WbbI	CAZyme	53787	54842	+	GT113
MGYG000003134_00572	Oligopeptide-binding protein SarA	TC	55080	57062	+	3.A.1.5.19
MGYG000003134_00573	hypothetical protein	CAZyme	57360	63914	+	GH20\| GH101\| CBM32
MGYG000003134_00574	hypothetical protein	CAZyme	64057	72498	+	GH20\| GH84\| CBM32
MGYG000003134_00575	Penicillin-binding protein 1A	CAZyme	72727	74940	-	GT51
Protein ID	Protein Name	Type	Start	End	Strand	Signature